Was Muhammad stoned? According to Wikipedia, he visited Ta’if, preached and was stoned:
By rejecting Muhammad’s religion, the people of Ta’if ordered their children to throw rocks and stones at Muhammad and Zayd ibn Harithah to make them leave the city and never come back. Muhammad and Zayd ibn Harithah were finally turned out by mocking and jeering crowds. The rocks that were thrown at Muhammad and Zayd by the Ta’if children caused them to bleed. Both were wounded and bleeding as they left Ta’if behind them. Muhammad bled so profusely from the stoning that his feet became clotted to his shoes and he was wounded badly.
Muhammad’s visit to Ta’if
As if I saw the Prophet talking about one of the prophets whose nation had beaten him and caused him to bleed, while he was cleaning the blood off his face and saying, “O Allah! Forgive my nation, for they have no knowledge.”
Sahih al-Bukhari 3477
Could he have been stoned at Mecca, by his tribe, the Quraysh or Nabateans? He could have. He was warned by his tribe, repeatedly:
They said, “O Shuʿayb, we do not understand much of what you say, and indeed, we consider you among us as weak. And if not for your family, we would have stoned you [to death]; and you are not to us one respected.”
Koran 11:91
Indeed, if they come to know of you, they will stone you or return you to their religion. And never would you succeed, then – ever.
Koran 18:20
[His father] said, “Have you no desire for my gods, O Abraham? If you do not desist, I will surely stone you, so avoid me a prolonged time.”
Koran 19:46
They said, “If you do not desist, O Noah, you will surely be of those who are stoned.”
Koran 26:116
They said, “Indeed, we consider you a bad omen. If you do not desist, we will surely stone you, and there will surely touch you, from us, a painful punishment.”
Koran 36:18
44:17 And We had already tried before them the people of Pharaoh, and there came to them a noble messenger [i.e., Moses], 18 [Saying], “Render to me the servants of Allāh. Indeed, I am to you a trustworthy messenger,” 19 And [saying], “Be not haughty with Allāh. Indeed, I have come to you with clear evidence. 20 And indeed, I have sought refuge in my Lord and your Lord, lest you stone me. 21 But if you do not believe me, then leave me alone.”
22 And [finally] he called to his Lord that these were a criminal people.
23 [Allāh said], “Then set out with My servants by night. Indeed, you are to be pursued. 24 And leave the sea in stillness. Indeed, they are an army to be drowned.”
25 How much they left behind of gardens and springs 26 And crops and noble sites 27 And comfort wherein they were amused.
28 Thus. And We caused to inherit it another people.
29 And the heaven and earth wept not for them, nor were they reprieved.
30 And We certainly saved the Children of Israel from the humiliating torment – 31 From Pharaoh.
Indeed, he was a haughty one among the transgressors.
32 And We certainly chose them by knowledge over [all] the worlds.
33 And We gave them of signs that in which there was a clear trial.
Koran 44:17-33
This seems to be Muhammad’s account of his stoning by his tribe, by the leader, “Pharaoh”, and his escape. The really key part is Muhammad showing he and “Pharaoh” worship the same idol:
44:20 And indeed, I have sought refuge in my Lord and your Lord, lest you stone me. 21 But if you do not believe me, then leave me alone.
Koran 44:20-21
The whining of Muhammad: “then leave me alone”! Then, Muhammad fled Mecca with Abu Bakr.
If you do not aid him [i.e., the Prophet] – Allāh has already aided him when those who disbelieved had driven him out [of Makkah] as one of two, when they were in the cave and he [i.e., Muḥammad] said to his companion, “Do not grieve; indeed Allāh is with us.”
And Allāh sent down His tranquility upon him and supported him with soldiers [i.e., angels] you did not see and made the word of those who disbelieved the lowest, while the word of Allāh – that is the highest.
And Allāh is Exalted in Might and Wise.
Koran 9:40
Muhammad showed he was possessed: “Do not grieve; indeed Allāh is with us.”
Later, I discovered that the Muslim scholars knew that Muhammad stoned with the story of Habib the Carpenter.
Why were they fleeing?
Muhammad was a false prophet, for a false god, Allah, for a false religion, Islam, without even a false book, the Koran.
Koran Contradiction 